• Cyberinfrastructure

  • What is Cyberinfrastructure?
  • IU's Cyberinfrastructure Overview
  • IU Cyberinfrastructure News

• Accessing IU's Cyberinfrastructure

  • Introductory Resources
  • Portals to IU Cyberinfrastructure
  • Initiative for Economic Development

• Systems

  • High Performance Systems
  • Storage
  • Data Capacitor
  • Rendering Portal

• Consulting

  • High Performance Applications
  • Statistics and Math
  • Visualization
  • Bioinformatics
  • Biomedical Applications
  • Ask for Help

• Outcomes and Impact

  • Scholarship Snapshots
  • Publications
  • Grants and Economic Impact
  • Events and Outreach
  • Quality

• About RT

  • Vision and Planning
  • Leadership
  • Round Table

The Big Red Cluster

Available Software

The following table contains all of the macros and keywords available for use with the SoftEnv system on Big Red. If you need a software package that is not listed in this table, please submit a Research Systems Software Request. For more information on the SoftEnv system, please see the Softenv section of the Big Red Primer.

In addition to the packages available via SoftEnv, there are several utilities and applications included in the SuSE Linux Enterprise Server distribution. Your default path should be configured to allow use of the distribution software. Please contact the High Performance Systems group, hps-admin@iu.edu, if you feel there's a problem with your environment, or software that should be available in the distribution.

(A table of keywords sorted by type is also available)

Macro	Description
@GA-mpich-ibm-32	32 bit Global Array MPICH compiled
@GA-mpich-ibm-64	64 bit Global Array MPICH compiled
@Rosetta	Protein prediction and design software
@amber9	AMBER 9, 64-bit, XL, Serial & Mpich-mx-ibm-64
@auto-07-32-MPI	Auto ver. 07p; 32-bit addressing; MPI-enabled
@auto-07-64-MPI	Auto ver. 07p; 64-bit addressing; MPI-enabled
@bigred	Default environment for Big Red users
@bio	Bioinformatics Applications
@charm++	CHARM++5.9 IBM 64bit FFTW3-64-single MPICH-MX-IBM-64
@cpmd-3.11-IBM-64	Car-Parrinello Molecular Dynamics w/ MPI & SMP
@default	Standard site-specific settings
@globus--4.0.1-mpich-mx-xlc	Globus 4.0.1 mpicc64 flavor with xlc compiler
@globus-4.0	Globus Toolkit 4.0.1 and related tools
@lapack-32	Lapack - Netlib distribution, 32-bit
@lapack-64	Lapack - Netlib distribution, 64-bit
@mpich-g2-1.2.6e-mpich-mx-xlc	MPICH-G2 1.2.6e with Globus 4.0.1 mpi flavor and compiler
@namd-2.6-ibm-64	NAMD 64-bit, IBM XL, MPICH-MX-IBM-64
@namd-2.6b2-ibm-64	NAMD 64-bit, IBM XL, MPICH-MX-IBM-64
@namd-ibm-64	NAMD 64-bit, IBM XL, MPICH-MX-IBM-64
@phylogibbs-1.0-gcc-32	Transcription factor binding sites finder, 32 bit, gcc
@phylogibbs-1.0-gcc-64	Transcription factor binding sites finder, 64 bit, gcc
@phylogibbs-1.0-ibm-64	Transcription factor binding sites finder, 64 bit, IBM compiler
@scalapack-32	Scalapack - Netlib distribution, 32-bit, MPICH-MX version
@scalapack-64	Scalapack - Netlib distribution, 64-bit, MPICH-MX version
@teragrid-basic	Basic Production Common TeraGrid Software Stack (CTSS)
@teragrid-dev	TeraGrid development software suite

Keyword	Description
+Chaco-64	v.2.2; Multilevel graph partitioning package
+Garli	Heuristic phylogenetic package using GTR model
+IM	Isolation with Migration - population divergence modelling
+ImageMagick	ImageMagick, system default version
+ImageMagick-6.2.9-32	ImageMagick 6.2.9-32
+ImageMagick-6.2.9-64	ImageMagick 6.2.9-64
+ItclItk	ITcl 8.4.14, ITk 3.3, IWidgets 4.0.1
+PyACTS-1.0-python2.3-32	Python2.3 wrappers for the linear algebra libraries, 32-bit
+PyACTS-1.0-python2.4.3-32	Python2.4 wrappers for the linear algebra libraries, 32-bit
+PyACTS-1.0-python2.4.3-64	Python2.4 wrappers for the linear algebra libraries, 64-bit
+R	S clone, system default version
+R-2.4.1-gcc-32	R: statistical computing and graphics, gcc 32-bit
+R-2.4.1-ibm-32	R: statistical computing and graphics, IBM compiler 32-bit
+R-2.5.0-ibm-64	IBM compiler 64 bit R
+R-2.6.0	R: statistical computing and graphics, gcc 32-bit
+Raster3D	Generating raster images of proteins (default)
+Raster3D_2.7d	Generating raster images of proteins or other molecules
+SVDPACK-64	SVDPACK 64-bit for Fortran
+VTK-4.4.2-32	VTK 4.4.2, 32-bit
+VTK-4.4.2-64	VTK 4.4.2, 64-bit
+VTK-5.0.2-64	VTK 5.0.2, 64-bit
+amber8-serial	AMBER 8, 64-bit, XL, serial
+ant	Apache Ant, system default version
+apache-ant	Apache Ant, system default version
+apache-ant-1.6.5	Apache Ant 1.6.5, Java-based build tool
+apache-ant-1.6.5-r1	Apache Ant, system default version
+atlas-32	Automatically Tuned Linear Algebra Software
+atlas-64	Automatially Tuned Linear Algebra Software
+batch	local batch scripts
+berkeley_upc-2.4.0	Berkeley UPC Compiler
+berkeley_upc-2.4.0-mpi	Berkeley UPC Hybrid Compiler
+berkeley_upc-2.4.0-openmpi-ibm-64	Berkeley UPC Compiler with OpenMPI and IBM XLC 64-bit
+berkeley_upc-2.4.0-openmpi-ibm-64-hybrid	Berkeley UPC Hybrid Compiler with OpenMPI and IBM XLC 64-bit
+bioperl	Bioperl application 1.4.0
+blacs-32	Netlib distribution, 32-bit, MPICH-MX version
+blacs-64	Netlib distribution, 64-bit, MPICH-MX version
+blas-32	Netlib distribution, 32-bit
+blas-64	Netlib distribution, 64-bit
+blastz	blastz-2004-12-27
+blastz-2004-12-27	Blastz alignment application
+boxshade	boxshade
+cdo-32	CDO-32-1.0.7: use w/ netcdf-3.6.1-ibm-32
+cdo-64	CDO-64-1.0.7: use w/ netcdf-3.6.1-ibm-64
+cern	cernlib binaries and libraries
+clhep-1.9.3.1-xlc-64	CLHEP 1.9.3-1, XL build
+clisp-2.41	GNU CLISP
+clustalw-mpi	Clustalw Multiple Alignment Application (Parallel)
+cmake	CMake: Cross-platform 'make'
+condor	Condor 6.8.4
+condor-6.8.4	Condor 6.8.4
+condor-6.9.1	Condor 6.9.1
+condor-6.9.3-r1	Condor 6.9.3
+condor-g	Condor-g 6.8.4
+condor-g-6.8.4	Condor-G 6.8.4
+crimap	Crimap - Optimized
+cvs-environment	CVS Environment Variables
+dock-5.4	DOCK 5.4.0 with Serial and dock5mpi-mpich2-ip-ibm-32
+drseed	Randon seed generator
+espresso-2.1.4-mpich-ibm-64	Quantum Espresso 2.1.4 64-bit XL MPICH-MX
+espresso-3.1.1-ibm-32	Quantum Espresso 3.1.1 32-bit XL Serial
+espresso-3.1.1-ibm-64	Quantum Espresso 3.1.1 64-bit XL Serial
+espresso-3.1.1-mpich-ibm-32	Quantum Espresso 3.1.1 32-bit XL MPICH-MX
+espresso-3.1.1-mpich-ibm-64	Quantum Espresso 3.1.1 64-bit XL MPICH-MX
+fasta	Fasta Sequence Comparison
+fdpr	Post-link optimizer for Linux on POWER
+fftw2.1.5-64-single	FFTW 2 1.5 64-bit, single precision, XLC/F build
+fftw3	Fastest Fourier Transform in the West, system default version
+fftw3-32-double	FFTW 3 - 32 bit, double precision, XLC/F build
+fftw3-32-single	FFTW 3 - 32 bit, single precision, XLC/F build
+fftw3-64-double	FFTW 3 - 64 bit, double precision, XLC/F build
+fftw3-64-single	FFTW 3 - 64 bit, single precision, XLC/F build
+gamess-ibm-32	Gamess, 32-bit, XL
+gamess-ibm-64	Gamess, 64-bit, XL
+gcc-4.1.1	Gnu gcc-4.1.1
+gcc-4.2.2	Gnu gcc-4.2.2
+globus-4.0.1	Globus Toolkit 4.0.1
+globus-4.0.1-r3	Globus Toolkit 4.0.1
+globus-mpicc64-4.0.1-mpich-mx-xlc-r2	Globus 4.0.1 mpicc64 flavor
+globus-mpicc64dbgpthr-4.0.1-mpich-mx-xlc-r1	Globus 4.0.1 mpicc64dbgpthr flavor
+globus-mpicc64pthr-4.0.1-mpich-mx-xlc-r1	Globus 4.0.1 mpicc64pthr flavor
+gmp	GNU Multiple Precision Library, system default version
+gmp-4.2.1	GNU Multiple Precision Library 4.2.1
+grace	GRACE software for creating eps files from data
+graphviz-2.12	Graphviz software for representing structural information as graphs
+gridshell	GridShell/MyCluster
+gridshell-0.9.9-9	Gridshell/MyCluster 0.9.9-9
+gromacs-3.3.1-mpi-64	Gromacs 3.3.1 MPICH-MX-64, FFTW3-64-single
+gromacs-3.3.1-serial-64	Gromacs 3.3.1, Serial, FFTW3-64-single
+gromacs-3.3.2-serial-double-64	Gromacs 3.3.2, Serial, double precision, FFTW3-64-double
+gsl	GNU Scientific Library - xlc compiled
+gsl-1.8-gcc	GNU Scientific Library - gcc compiled
+gsl-1.8-gcc-32	GNU Scientific Library - gcc compiled, 32-bit
+gsl-1.8-xlc	GNU Scientific Library - xlc compiled
+gx-map-0.4.5	GX Map 0.4.5
+gx-map-0.5.3.2	GX Map 0.5.3.2
+hdf5-1.6.5	HDF5 1.6.5 64-bit addressing
+hdf5-1.6.5-64	HDF5 1.6.5 64-bit addressing
+hdf5-1.6.5-r1	HDF5 1.6.5 64-bit addressing
+hpss	Applications to access HPSS.
+ibm-java-1.5.0	IBM Java2 1.5.0 5.0 SDK & JRE
+im	Isolation with Migration - population divergence modelling
+java	Java SDK & JRE, system default version
+java-1.5.0_ibm	Java SDK & JRE, system default version
+lam-ip-ibm-32	LAM P4 IBM 32bit
+lam-ip-ibm-64	LAM P4 IBM 64bit
+libtool	GNU libtool, system default version
+libtool-1.5.22	GNU libtool, v1.5.22
+loadl	IBM LoadLeveler, system default version
+loadl-3.3.2	IBM LoadLeveler 3.3.2
+local-utils	Local Big Red scripts
+mcmccoal	Markov Chain Monte Carlo Simulation of Genetic Evolution
+medgen	Medgen - Custom Packages
+meme	MEME Motif Discovery Program (Default)
+meme-3.5.4	MEME Motif Discovery Program 3.5.4
+moab	Moab Workload Manager, system default version
+moab-4.5.0p8-200608211504	Moab Workload Manager 4.5.0p8
+moab-5.1.0p9-snap.200712171308	Moab Workload Manager 5.1.0p9-snap.200712171308
+molscript-2.1.2	Displaying molecular 3D structures
+mpi-hmmer	Parallel HMMer, uses mpich-mx-ibm-32
+mpich-g2-1.2.6e-mpich-mx-xlc-r2	MPICH-G2 1.2.6e with Globus 4.0.1 mpi flavor
+mpich-mx-1.2.7..1-gcc-32	MPICH MX 1.2.7..1 gcc 3.3.3 32-bit
+mpich-mx-1.2.7..1-gcc-4.1.1-64	MPICH MX 1.2.7..1 gcc 4.1.1 64-bit
+mpich-mx-1.2.7..1-gcc-64	MPICH MX 1.2.7..1 gcc 3.3.3 STATIC 64-bit
+mpich-mx-ibm-32	MPICH MX xlc/xlf 32bit
+mpich-mx-ibm-64	MPICH MX xlc/xlf 64bit
+mrbayes	Bayesian estimation of Phylogeny
+mrbayes-3.1.2	MrBayes 3.1.2
+multiclustal	automate alignment parameter for Clustal W
+mummer	MUMMER genome-level alignment tool
+namd-net	namd research version, do not use for production
+nano	pico substitute, system default version
+nano-1.2.5	pico substitute
+ncbi	NCBI-2.2.16 (BLAST Default)
+ncbi-2.2.12	NCBI-2.2.12 (BLAST)
+ncbi-2.2.15	NCBI-2.2.15 (BLAST)
+ncbi-2.2.16	NCBI-2.2.16 (BLAST)
+ncurses	GNU Ncurses, system default version
+ncurses-5.5	GNU Ncurses 5.5
+nektar-g2-ibm-64	Experimental, distributed NEKTAR
+netcdf-3.6.1-gcc-32	NetCDF 3.6.1, 32-bit, GCC, with -fPIC switch
+netcdf-3.6.1-gcc-64	NetCDF 3.6.1, 64-bit, GCC, with -fPIC switch
+netcdf-3.6.1-ibm-32	NetCDF 3.6.1, 32-bit, IBM XL, with -qpic=large switch
+netcdf-3.6.1-ibm-64	NetCDF 3.6.1, 64-bit, IBM XL, with -qpic=large switch
+octave-2.1.73	Octave-2.1.73, gcc, 32-bit
+openafs	OpenAFS file system
+openmpi-1.1-mx-gcc-3.3.3	Open MPI 1.1, gcc 3.3.3 Test static version
+openmpi-1.1.1-xlc-8.0-32	Open MPI 1.1.1 STATIC, XL-8.0 32-bit (MX,TCP,Shared Memory)
+openmpi-1.1.1-xlc-8.0-64	Open MPI 1.1.1 STATIC, XL-8.0 64-bit (MX,TCP,Shared Memory)
+openmpi-1.2-mx-ibm-64	Open MPI 1.2 MX STATIC IBM C/F 8/10.1 64-bit
+openmpi-1.2.4-ibm-32	OpenMPI, 32 bit built with IBM compiler (mx,sm,self,tcp)
+openmpi-1.2.4-ibm-64	OpenMPI, 64 bit built with IBM compiler (mx,sm,self,tcp)
+openmpi-ibm-64	OpenMPI, 64 bit built with IBM compiler (mx,sm,self,tcp)
+p7zip	File archiver/compressor for the 7z format
+pacman	Package Management, system default version
+pacman-3.15	Pacman 3.15
+pacman-3.20	Pacman 3.20
+paml	paml-3.15, xlc 8.0
+parpack	PARPACK eigenvectors of large matricies
+phast-1.2.1	phast: Simulate Ground-Water Flow. XL, 64-bit
+phdf5-1.6.5-r1	PHDF5 1.6.5
+phylip	Programs for inferring phylogenies
+phylip-3.65	Phylip, programs for inferring phylogenies, 3.65
+pkg-config	pkg-config, system default version
+pkg-config-0.20	pkg-config
+postgres-gcc-64	PostreSQL Relational Database Tools, 64-bit gcc
+povray-3.6.1	POV-Ray ray tracing program
+procheck	Procheck Package
+python-2.4.3_32	Python: OO interpreted scripting language, 32 bit
+python-2.4.3_64	Python: OO interpreted scripting language, 64 bit
+qt4	Qt4 default version
+qt4-4.3.0	Qt4
+root_v5.14.00-gcc-64	Object-Oriented Data Analysis Framework, gcc 64-bit
+ruby	Ruby, system default version
+ruby-1.8.4	Ruby: Object-oriented scripting language, v1.8.4
+shelx	Shelx - Modified for huge data
+sibs	Sibs, originally DOS; Help file in $TG_APPS_PREFIX/mm2-sibs/sibs.help
+simwalk2	Simwalk2 version 2.91
+softenv	Software Environment Management System
+softenv-1.6.2	SoftEnv 1.6.2
+sprng2-32-serial	SPRNG, 32-bit lib for serial apps, No Prime Modulus Linear Congruential Generator
+sprng2-64-serial	SPRNG, 64-bit lib for serial apps
+sqlite-3.4.0-gcc-64	SQLite is a small C library that implements a self-contained, embeddable, zero-configuration SQL database engine
+srb-client-3.4.1	SRB Client 3.4.1
+srb-client-3.4.1-r2	SRB Client 3.4.1
+stride-1.0	Protein secondary structure assignment from atomic coordinates
+svdlibc-32	SVDLIBC 32-bit
+svdlibc-64	SVDLIBC 64-bit
+svdpackc-32	SVDPACKC 32-bit
+svdpackc-64	SVDPACKC 64-bit
+svn	Subversion 1.3.2, version control system
+swig	Simplified Wrapper and Interface Generator, system default version
+swig-1.3.29	Simplified Wrapper and Interface Generator, 1.3.29
+texinfo	GNU Texinfo, system default version
+texinfo-4.8	GNU Texinfo 4.8
+tg-environment-1.0	TeraGrid-specific environment settings
+tg-filesystems-1.0	TeraGrid file system environment settings
+tg-policy-2.0	tg-policy v2.0
+tgcp-1.0.0	tgcp 1.0.0
+tgcp-1.0.0-r2	tgcp 1.0.0
+tgproxy-0.9.1	TeraGrid Proxy Tools 0.9.1
+tgusage-2.4	tgusage 2.4-r1
+tgusage-2.9	tgusage 2.9-r1
+totalview	TotalView Parallel Debugger. system default version
+totalview-7.3.0-2	TotalView 7.3.0-2 Parallel Debugger
+totalview-8.3.0-1	TotalView 8.3.0-1 Parallel Debugger
+tree-puzzle	Tree-Puzzle 5.2
+user-paths	Standard user-owned paths
+vmd	Default for vmd
+vmd-1.8.6	NAMD viz package with the graphics removed.
+xerces-c-2.7.0-gcc-32	Xerces-C++ XML Parser, gcc 32-bit
+xerces-c-2.7.0-gcc-64	Xerces-C++ XML Parser, gcc 64-bit
+xerces-c-2.7.0-xlc-32	Xerces-C++ XML Parser, xlc 32-bit
+xerces-c-2.7.0-xlc-64	Xerces-C++ XML Parser, xlc 64-bit

• About UITS
• Contact UITS
• Job Opportunities
• Press Room
• Site Map
• Comments

Copyright 2006, The Trustees of Indiana University