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Book Chapter

Ekanayake, J., X. Qiu, T. Gunarathne, S. Beason, and G. C. Fox, "High Performance Parallel Computing with Clouds and Cloud Technologies" Cloud Computing and Software Services: Theory and Techniques: CRC Press (Taylor and Francis), Jul 2010. Abstract

Conference Paper

Qiu, X., J. Ekanayake, S. Beason, T. Gunarathne, G. C. Fox, R. Barga, and D. Gannon, "Cloud Technologies for Bioinformatics Applications" 2nd ACM Workshop on Many-Task Computing on Grids and Supercomputers (Supercomputing'09), Portland, OR, Nov 09, 2009. Abstract

Qiu, X., J. Ekanayake, G. C. Fox, T. Gunarathne, and S. Beason, "Computational Methods for Large Scale DNA Data Analysis" Microsoft eScience workshop, Carnegie Mellon University, Pittsburgh, PA, Oct 16 2009. Abstract

Qiu, X., J. Ekanayake, T. Gunarathne, S. - H. Bae, J. Y. Choi, S. Beason, and G. C. Fox, "Using MapReduce Technologies in Bioinformatics and Medical Informatics" The International Conference for High Performance Computing, Networking, Storage and Analysis (SC'09), Portland, OR, Nov 16 2009.

Conference Proceedings

Perera, S., S. Marru, T. Gunarathne, D. Gannon, and B. Plale, "Application of Management Frameworks to Manage Workflow-Based Systems: A Case Study on a Large Scale E-science Project " International Conference on Web Services (ICWS), Los Angeles, CA , IEEE, pp. 519-526, Jul 2009. Abstract

Perera, S., S. Marru, T. Gunarathne, D. Gannon, and B. Plale, "Application of Management Frameworks: A Case Study on a Large Scale E-science Project" International Conference on Web Services (ICWS), Los Angeles, CA USA, IEEE Computer Society, pp. 519-526, Jul 2009. Abstract

Fox, G. C., X. Qiu, S. Beason, J. Y. Choi, J. Ekanayake, T. Gunarathne, M. Rho, H. Tang, N. Devadasan, and G. Liu, "Biomedical Case Studies in Data Intensive Computing" The 1st International Conference on Cloud Computing (CloudCom 2009) , vol. 5931/2009, Beijing Jiaotong University, China, Springer Berlin / Heidelberg, pp. 2-18, Dec 1-4 2009. Abstract

Gunarathne, T., T. - L. Wu, J. Qiu, and G. C. Fox, "Cloud Computing Paradigms for Pleasingly Parallel Biomedical Applications" The ACM International Symposium on High Performance Distributed Computing, Chicago, IL, ACM, Jun 2010. Abstract

Fox, G. C., J. Qiu, S. Beason, J. Ekanayake, T. Gunarathne, J. Y. Choi, Y. Ruan, S. - H. Bae, and H. Li, "Data Intensive Biomedical Computing Systems" Indiana State IT Meeting, University Place Conference Center, Indianapolis, IN, Indiana University, Oct 1 2009.

Ekanayake, J., T. Gunarathne, A. S. Balkir, G. C. Fox, C. Poulain, N. Araujo, and R. Barga, "DryadLINQ for Scientific Analyses" 5th IEEE International Conference on e-Science, Oxford UK, Dec 9-11 2009. Abstract

Gunarathne, T., C. Herath, E. Chinthaka, and S. Marru, "Experience with Adapting a WS-BPEL Runtime for eScience Workflows" The International Conference for High Performance Computing, Networking, Storage and Analysis (SC'09), Portland, OR, ACM Press, pp. 7, Nov 20 2009. Abstract

Qiu, J., T. Gunarathne, J. Ekanayake, J. Y. Choi, S. - H. Bae, H. Li, B. Zhang, Y. Ryan, S. Ekanayake, T. - L. Wu, et al., "Hybrid Cloud and Cluster Computing Paradigms for Life Science Applications" the 11th Annual Bioinformatics Open Source Conference , Boston, MA, Jul 2010.

Gunarathne, T., T. - L. Wu, J. Qiu, and G. C. Fox, "MapReduce in the Clouds for Science" 2nd IEEE International Conference on Cloud Computing Technology and Science (CloudCom2010), Indianapolis, IN, IEEE, Nov 2010. Abstract

Ekanayake, J., H. Li, B. Zhang, T. Gunarathne, S. - H. Bae, J. Qiu, and G. C. Fox, "Twister: A Runtime for Iterative MapReduce" The ACM International Symposium on High Performance Distributed Computing (HPDC), Chicago, Jun 2010. Abstract

Journal Article

Gunarathne, T., T. - L. Wu, J. Y. Choi, S. - H. Bae, and J. Qiu, "Cloud Computing Paradigms for Pleasingly Parallel Biomedical Applications" Concurrency and Computation: Practice and Experience: John Wiley and Sons, Jun 27 2011. Abstract

Ekanayake, J., T. Gunarathne, and J. Qiu, "Cloud Technologies for Bioinformatics Applications" IEEE Transactions on Parallel and Distributed Systems, vol. PP, no. PP, pp. 1-1, Oct 2010. Abstract

Miscellaneous

Qiu, J., J. Y. Choi, S. - H. Bae, T. Gunarathne, G. C. Fox, B. Cao, and D. Wild, Browsing Large Scale Cheminformatics Data with Dimension Reduction , May 2010.

Qiu, J., A. Hughes, S. Ekanayake, T. Gunarathne, S. T. -lon Wu, H. Li, J. Y. Choi, S. - H. Bae, and Y. Ruan, Parallel Applications And Tools For Cloud Computing Environments , Indianapolis, IN, Indiana University, Nov 2010.

Poster

Group, S. A. L. S. A., G. C. Fox, J. Qiu, S. Beason, J. Ekanayake, T. Gunarathne, J. Y. Choi, Y. Ruan, S. - H. Bae, and H. Li, Data Intensive Biomedical Computing Systems, Indiana State IT meeting, http://www.statewideit.iu.edu/, IUPUI Conference Center, Indianapolis IN, Oct 01 2009.

Download: DataIntensiveBiomedicalComputingSystem_StateIT09_Poster2.pptx (1.81 MB)

Gunarathne, T., T. - L. Wu, H. Li, Y. Zhou, B. Zhang, A. Hughes, S. Ekanayake, J. Y. Choi, S. - H. Bae, Y. Ruan, et al., Parallel Applications And Tools For Cloud Computing Environments, 2nd IEEE International Conference on Cloud Computing Technology and Science (CloudCom2010), Indianapolis, Indiana, Nov 30-12 3 2010.

Download: salsa_cloudcom2010_poster.final_.pptx (5.63 MB)

Qiu, J., J. Ekanayake, T. Gunarathne, G. C. Fox, S. Beason, J. Y. Choi, Y. Ruan, S. - H. Bae, and H. Li, SALSA Group Poster/Demo, SC09 Conference Indiana University Booth, http://sc09.supercomputing.org/, Portland Oregon, Nov 16 2009.

Download: sc09-salsa-demo-final-fixed.pptx (2.42 MB)

Qiu, J., J. Ekanayake, T. Gunarathne, G. C. Fox, S. Beason, J. Y. Choi, Y. Ruan, S. - H. Bae, and H. Li, "Science in Clouds"SALSA Group Poster/Demo, Portland, OR, Indiana University, The International Conference for High Performance Computing, Networking, Storage and Analysis (SC'09), Portland, OR USA, Nov 16-20 2009.

Presentation

Gunarathne, T., T. - L. Wu, J. Qiu, and G. C. Fox, Cloud Computing Paradigms for Pleasingly Parallel Biomedical Applications, Emerging Computational Methods for the Life Sciences, The ACM International Symposium on High Performance Distributed Computing (HPDC), Chicago, IL, Jun 21 2010.

Download: ecmls_slides_classic_cloud.pptx (3.96 MB)

Gunarathne, T., C. Herath, E. Chinthaka, and S. Marru, Experience with Adapting a WS-BPEL Runtime for eScience Workflows, Grid Computing Environments 2009 (GCE09), The International Conference for High Performance Computing, networking, Storage and Analysis (SC09), Portland, OR, Nov 20 2009.

Download: gunarathneworkflow.pdf (8.62 MB)

Gunarathne, T., T. - L. Wu, J. Qiu, and G. C. Fox, MapReduce in the Clouds for Science, 2nd IEEE International Conference on Cloud Computing Technology and Science (CloudCom2010), Indianapolis, Indiana, Nov 20-12 3 2010.

Download: mapreduceintheclouds_pres_v1_tomail.pptx (1.8 MB)

PTI Bibliography